get_indiv_surv()
now supports pivoting of multiple columns in addition to condition
(eg: sex
, genotype
, treatment
). However, at least one column must still be named condition
to allow for proper pivoting. This column does not need to be included in the custom formula passed to run_bulksurv()
, but is necessary for get_indiv_surv()
to work properly.run_bulksurv()
now allows custom formula via the formula
parameter. Users can now input custom formula, such as Surv(day, status) ~ condition + sex
.run_bulksurv()
now defaults to print_stats = FALSE
to avoid verbose messages.run_bulksurv()
- returnData
now returns data as a listreturnData = TRUE
in run_bulksurv()
returns pivoted data as a list itempivot_prism()
that erroneously expanded the first columnrun_bulksurv()
now supports subsetting via the sample_order
parameter. run_bulksurv(df)
now runs a default analysis for all conditions.run_bulksurv()
has a print_plot
parameter that allows plots to be turned off.p_adjust_method
can now be customized in run_bulksurv()
and summary_stats()
.s * Deployed website on GitHub pages. * New pivot_prism()
function to transform bulk survival data into GraphPad PRISM compatible format * Split README file into three vignette articles for easier navigation.