Installing ggbulksurv

Dependencies

First, install CRAN dependencies:

# CRAN dependencies
install.packages(c("dplyr", "ggplot2", "janitor", "magrittr", "scales", "tidyr"))

Next, install Bioconductor dependencies.

# Bioconductor dependencies
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(c("survival", "survminer"))

Installation

Lastly, install the development version of ggbulksurv from GitHub with:

install.packages("devtools")

• For Mac users: If the above code throws an error, you may need to install Xcode before installing devtools. The easiest way to do this is via Homebrew, a convenient package manager which automatically installs Xcode as well.

devtools::install_github("qhuitan/ggbulksurv")

Additional notes for the beginner R user

To install dependencies, copy each chunk of code above (in light grey) and paste them in the R console (bottom left panel). Upon pressing enter, you should see the installation begin.